HL_8CDU_012

3D structure

PDB id

8CDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rnase R bound to a 30S degradation intermediate (main state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

8CDU|1|A|U|476

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CDU_012 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.3749

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

8CDU|1|A|C|472
8CDU|1|A|G|473
8CDU|1|A|A|474
8CDU|1|A|A|475
8CDU|1|A|U|476
8CDU|1|A|A|477
8CDU|1|A|G|478

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16