HL_8CDU_020

3D structure

PDB id

8CDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rnase R bound to a 30S degradation intermediate (main state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAACG

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CDU_020 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.2391

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

8CDU|1|A|C|972
8CDU|1|A|G|973
8CDU|1|A|A|974
8CDU|1|A|A|975
8CDU|1|A|A|979
8CDU|1|A|C|980
8CDU|1|A|G|981

Current chains

Chain A

16S rRNA

Nearby chains

Chain K

30S ribosomal protein S10

Chain N

30S ribosomal protein S14