HL_8CEH_034

3D structure

PDB id

8CEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.05 Å

Loop

Sequence

GCCUGAUUUUAUGCAGGCC

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CEH|1|AA|G|1561
8CEH|1|AA|C|1562
8CEH|1|AA|C|1563
8CEH|1|AA|U|1564
8CEH|1|AA|G|1565
8CEH|1|AA|A|1566
8CEH|1|AA|U|1567
8CEH|1|AA|U|1568
8CEH|1|AA|U|1569
8CEH|1|AA|U|1570
8CEH|1|AA|A|1571
8CEH|1|AA|U|1572
8CEH|1|AA|G|1573
8CEH|1|AA|C|1574
8CEH|1|AA|A|1575
8CEH|1|AA|G|1576
8CEH|1|AA|G|1577
8CEH|1|AA|C|1578
8CEH|1|AA|C|1579

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain CC

5.8S ribosomal RNA; 5.8S rRNA

Chain EE

60S ribosomal protein L2-A

Chain J

60S ribosomal protein L25

Chain KK

60S ribosomal protein L8-A