HL_8CEH_035
3D structure
- PDB id
- 8CEH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.05 Å
Loop
- Sequence
- GUUAAGAUUC
- Length
- 10 nucleotides
- Bulged bases
- 8CEH|1|AA|U|1606, 8CEH|1|AA|U|1607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CEH_035 not in the Motif Atlas
- Homologous match to HL_8C3A_035
- Geometric discrepancy: 0.0769
- The information below is about HL_8C3A_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_35087.1
- Basepair signature
- cWW-tWH-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8CEH|1|AA|G|1599
8CEH|1|AA|U|1600
8CEH|1|AA|U|1601
8CEH|1|AA|A|1602
8CEH|1|AA|A|1603
8CEH|1|AA|G|1604
8CEH|1|AA|A|1605
8CEH|1|AA|U|1606
8CEH|1|AA|U|1607
8CEH|1|AA|C|1608
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain D
- 60S ribosomal protein L19-A
- Chain J
- 60S ribosomal protein L25
- Chain S
- 60S ribosomal protein L34-A
- Chain X
- 60S ribosomal protein L39
Coloring options: