HL_8CEH_076
3D structure
- PDB id
- 8CEH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.05 Å
Loop
- Sequence
- ACUGAA(YYG)AU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: YYG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CEH_076 not in the Motif Atlas
- Homologous match to HL_6UFG_007
- Geometric discrepancy: 0.1284
- The information below is about HL_6UFG_007
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
8CEH|1|Bb|A|31
8CEH|1|Bb|C|32
8CEH|1|Bb|U|33
8CEH|1|Bb|G|34
8CEH|1|Bb|A|35
8CEH|1|Bb|A|36
8CEH|1|Bb|YYG|37
8CEH|1|Bb|A|38
8CEH|1|Bb|U|39
Current chains
- Chain Bb
- Transfer RNA Phe
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain Aa
- Elongation factor 2
- Chain Cc
- Transfer RNA; tRNA
- Chain Dd
- Messenger RNA
- Chain c
- Small subunit ribosomal RNA; SSU rRNA
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