HL_8CEH_095

3D structure

PDB id

8CEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.05 Å

Loop

Sequence

ACAAUGUAAAUACCUU

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CEH|1|c|A|518
8CEH|1|c|C|519
8CEH|1|c|A|520
8CEH|1|c|A|521
8CEH|1|c|U|522
8CEH|1|c|G|523
8CEH|1|c|U|524
8CEH|1|c|A|525
8CEH|1|c|A|526
8CEH|1|c|A|527
8CEH|1|c|U|528
8CEH|1|c|A|529
8CEH|1|c|C|530
8CEH|1|c|C|531
8CEH|1|c|U|532
8CEH|1|c|U|533

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 0

40S ribosomal protein S24-A

Chain h

40S ribosomal protein S4-A

Chain m

40S ribosomal protein S9-A