HL_8CEH_115

3D structure

PDB id

8CEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.05 Å

Loop

Sequence

CCUCGG

Length

6 nucleotides

Bulged bases

8CEH|1|AA|U|545, 8CEH|1|AA|C|546

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CEH_115 not in the Motif Atlas

Homologous match to HL_8P9A_231

Geometric discrepancy: 0.3961

The information below is about HL_8P9A_231

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32682.1

Basepair signature

cWW-F-F

Number of instances in this motif group

3

Unit IDs

8CEH|1|AA|C|543
8CEH|1|AA|C|544
8CEH|1|AA|U|545
8CEH|1|AA|C|546
8CEH|1|AA|G|547
8CEH|1|AA|G|548

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain LL

RPL9A isoform 1