HL_8CEP_022

3D structure

PDB id

8CEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Round2 30S head (no antibiotic)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

G(2MG)G(MA6)(MA6)C

Length

6 nucleotides

Bulged bases

8CEP|1|A|G|1517

QA status

Modified nucleotides: 2MG, MA6

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CEP_022 not in the Motif Atlas

Homologous match to HL_6CZR_103

Geometric discrepancy: 0.1097

The information below is about HL_6CZR_103

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8CEP|1|A|G|1515
8CEP|1|A|2MG|1516
8CEP|1|A|G|1517
8CEP|1|A|MA6|1518
8CEP|1|A|MA6|1519
8CEP|1|A|C|1520

Current chains

Chain A

16S rRNA

Nearby chains

Chain G

Capreomycin IA

Chain I

Capreomycin IA

Chain a

Large subunit ribosomal RNA; LSU rRNA