HL_8CEU_006

3D structure

PDB id

8CEU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Retapamulin and Capreomycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.83 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

8CEU|1|a|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CEU_006 not in the Motif Atlas

Geometric match to HL_5J7L_139

Geometric discrepancy: 0.0547

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8CEU|1|a|G|194
8CEU|1|a|A|195
8CEU|1|a|A|196
8CEU|1|a|A|197
8CEU|1|a|C|198
8CEU|1|a|A|199
8CEU|1|a|U|200
8CEU|1|a|C|201

Current chains

Chain a

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L15

Chain w

Large ribosomal subunit protein bL28