HL_8CEU_011

3D structure

PDB id

8CEU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Retapamulin and Capreomycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.83 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

8CEU|1|a|G|329, 8CEU|1|a|A|330, 8CEU|1|a|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CEU_011 not in the Motif Atlas

Homologous match to HL_7RQB_012

Geometric discrepancy: 0.0805

The information below is about HL_7RQB_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.9

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

19

Unit IDs

8CEU|1|a|G|327
8CEU|1|a|U|328
8CEU|1|a|G|329
8CEU|1|a|A|330
8CEU|1|a|C|331
8CEU|1|a|A|332
8CEU|1|a|G|333
8CEU|1|a|C|334
8CEU|1|a|C|335

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

Large ribosomal subunit protein uL24