HL_8CEU_013

3D structure

PDB id

8CEU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Retapamulin and Capreomycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.83 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

8CEU|1|a|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CEU_013 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0525

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8CEU|1|a|G|410
8CEU|1|a|G|411
8CEU|1|a|A|412
8CEU|1|a|C|413
8CEU|1|a|C|414
8CEU|1|a|A|415
8CEU|1|a|U|416
8CEU|1|a|C|417

Current chains

Chain a

23S rRNA

Nearby chains