3D structure

PDB id
8CEU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Retapamulin and Capreomycin bound to the 50S subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.83 Å

Loop

Sequence
G(PSU)GCUAACGU
Length
10 nucleotides
Bulged bases
8CEU|1|a|U|958, 8CEU|1|a|C|961
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8CEU_026 not in the Motif Atlas
Homologous match to HL_5J7L_159
Geometric discrepancy: 0.0499
The information below is about HL_5J7L_159
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8CEU|1|a|G|954
8CEU|1|a|PSU|955
8CEU|1|a|G|956
8CEU|1|a|C|957
8CEU|1|a|U|958
8CEU|1|a|A|959
8CEU|1|a|A|960
8CEU|1|a|C|961
8CEU|1|a|G|962
8CEU|1|a|U|963

Current chains

Chain a
23S rRNA

Nearby chains

Chain b
5S ribosomal RNA; 5S rRNA
Chain l
Large ribosomal subunit protein uL16

Coloring options:


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