3D structure

PDB id
8CEU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Retapamulin and Capreomycin bound to the 50S subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.83 Å

Loop

Sequence
CUG(OMG)GGCGG
Length
9 nucleotides
Bulged bases
8CEU|1|a|G|2250
QA status
Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8CEU_049 not in the Motif Atlas
Homologous match to HL_5J7L_186
Geometric discrepancy: 0.0511
The information below is about HL_5J7L_186
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_85367.2
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
11

Unit IDs

8CEU|1|a|C|2248
8CEU|1|a|U|2249
8CEU|1|a|G|2250
8CEU|1|a|OMG|2251
8CEU|1|a|G|2252
8CEU|1|a|G|2253
8CEU|1|a|C|2254
8CEU|1|a|G|2255
8CEU|1|a|G|2256

Current chains

Chain a
23S rRNA

Nearby chains

Chain l
Large ribosomal subunit protein uL16
Chain v
Large ribosomal subunit protein bL27

Coloring options:


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