HL_8CF1_006

3D structure

PDB id

8CF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracycline bound to the 30S head

Experimental method

ELECTRON MICROSCOPY

Resolution

1.82 Å

Loop

Sequence

UGAUAAA

Length

7 nucleotides

Bulged bases

8CF1|1|A|U|1168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CF1_006 not in the Motif Atlas

Homologous match to HL_4LFB_027

Geometric discrepancy: 0.2537

The information below is about HL_4LFB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8CF1|1|A|U|1165
8CF1|1|A|G|1166
8CF1|1|A|A|1167
8CF1|1|A|U|1168
8CF1|1|A|A|1169
8CF1|1|A|A|1170
8CF1|1|A|A|1171

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

30S ribosomal protein S2