HL_8CF5_003

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CF5_003 not in the Motif Atlas

Homologous match to HL_8C3A_003

Geometric discrepancy: 0.0487

The information below is about HL_8C3A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

8CF5|1|AA|C|90
8CF5|1|AA|G|91
8CF5|1|AA|G|92
8CF5|1|AA|C|93
8CF5|1|AA|G|94
8CF5|1|AA|A|95
8CF5|1|AA|G|96

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L18-A

Chain Cc

Transfer RNA; tRNA

Chain M

60S ribosomal protein L28

Chain OO

60S ribosomal protein L13-A

Chain a

60S ribosomal protein L42-A