HL_8CF5_019

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CF5_019 not in the Motif Atlas

Homologous match to HL_5TBW_019

Geometric discrepancy: 0.0826

The information below is about HL_5TBW_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8CF5|1|AA|G|844
8CF5|1|AA|G|845
8CF5|1|AA|A|846
8CF5|1|AA|A|847
8CF5|1|AA|A|848
8CF5|1|AA|C|849

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain c

Small subunit ribosomal RNA; SSU rRNA

Chain o

40S ribosomal protein S11-A

Chain p

40S ribosomal protein S13