3D structure

PDB id
8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
Experimental method
ELECTRON MICROSCOPY
Resolution
2.71 Å

Loop

Sequence
UUGAUAUGAUG
Length
11 nucleotides
Bulged bases
8CF5|1|AA|G|1349, 8CF5|1|AA|A|1350, 8CF5|1|AA|U|1351, 8CF5|1|AA|A|1352, 8CF5|1|AA|U|1353, 8CF5|1|AA|G|1354, 8CF5|1|AA|U|1356
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8CF5_029 not in the Motif Atlas
Geometric match to HL_4OOG_001
Geometric discrepancy: 0.2217
The information below is about HL_4OOG_001
Detailed Annotation
Mini UNCG
Broad Annotation
No text annotation
Motif group
HL_56334.1
Basepair signature
cWW-F
Number of instances in this motif group
16

Unit IDs

8CF5|1|AA|U|1347
8CF5|1|AA|U|1348
8CF5|1|AA|G|1349
8CF5|1|AA|A|1350
8CF5|1|AA|U|1351
8CF5|1|AA|A|1352
8CF5|1|AA|U|1353
8CF5|1|AA|G|1354
8CF5|1|AA|A|1355
8CF5|1|AA|U|1356
8CF5|1|AA|G|1357

Current chains

Chain AA
25S ribosomal RNA

Nearby chains

Chain C
60S ribosomal protein L18-A
Chain GG
60S ribosomal protein L4-A
Chain II
60S ribosomal protein L6-A
Chain Q
60S ribosomal protein L32

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.341 s