HL_8CF5_035

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

GUUAAGAUUC

Length

10 nucleotides

Bulged bases

8CF5|1|AA|U|1606, 8CF5|1|AA|U|1607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CF5_035 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.101

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8CF5|1|AA|G|1599
8CF5|1|AA|U|1600
8CF5|1|AA|U|1601
8CF5|1|AA|A|1602
8CF5|1|AA|A|1603
8CF5|1|AA|G|1604
8CF5|1|AA|A|1605
8CF5|1|AA|U|1606
8CF5|1|AA|U|1607
8CF5|1|AA|C|1608

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L19-A

Chain J

60S ribosomal protein L25

Chain S

60S ribosomal protein L34-A