HL_8CF5_037

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

GUUAUCUUU

Length

9 nucleotides

Bulged bases

8CF5|1|AA|U|1687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CF5_037 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.1155

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8CF5|1|AA|G|1680
8CF5|1|AA|U|1681
8CF5|1|AA|U|1682
8CF5|1|AA|A|1683
8CF5|1|AA|U|1684
8CF5|1|AA|C|1685
8CF5|1|AA|U|1686
8CF5|1|AA|U|1687
8CF5|1|AA|U|1688

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L19-A

Chain G

60S ribosomal protein L22-A