HL_8CF5_043

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8CF5|1|AA|U|1925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CF5_043 not in the Motif Atlas

Geometric match to HL_5TBW_043

Geometric discrepancy: 0.0971

The information below is about HL_5TBW_043

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8CF5|1|AA|C|1923
8CF5|1|AA|U|1924
8CF5|1|AA|U|1925
8CF5|1|AA|C|1926
8CF5|1|AA|G|1927
8CF5|1|AA|G|1928

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain Z

60S ribosomal protein L41

Chain b

60S ribosomal protein L43-A

Chain c

Small subunit ribosomal RNA; SSU rRNA