HL_8CF5_050

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8CF5|1|AA|A|2372, 8CF5|1|AA|A|2373, 8CF5|1|AA|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CF5_050 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0537

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8CF5|1|AA|G|2369
8CF5|1|AA|G|2370
8CF5|1|AA|G|2371
8CF5|1|AA|A|2372
8CF5|1|AA|A|2373
8CF5|1|AA|C|2374
8CF5|1|AA|G|2375
8CF5|1|AA|G|2376
8CF5|1|AA|G|2377
8CF5|1|AA|C|2378

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L16-A

Chain FF

60S ribosomal protein L3

Chain Q

60S ribosomal protein L32