HL_8CF5_051

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

GUGUAGAAUAAGUGGGAGCUUCGGCGCCAGUGAAAUACCACUAC

Length

44 nucleotides

Bulged bases

8CF5|1|AA|U|2460, 8CF5|1|AA|C|2470

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CF5|1|AA|G|2452
8CF5|1|AA|U|2453
8CF5|1|AA|G|2454
8CF5|1|AA|U|2455
8CF5|1|AA|A|2456
8CF5|1|AA|G|2457
8CF5|1|AA|A|2458
8CF5|1|AA|A|2459
8CF5|1|AA|U|2460
8CF5|1|AA|A|2461
8CF5|1|AA|A|2462
8CF5|1|AA|G|2463
8CF5|1|AA|U|2464
8CF5|1|AA|G|2465
8CF5|1|AA|G|2466
8CF5|1|AA|G|2467
8CF5|1|AA|A|2468
8CF5|1|AA|G|2469
8CF5|1|AA|C|2470
8CF5|1|AA|U|2471
8CF5|1|AA|U|2472
8CF5|1|AA|C|2473
8CF5|1|AA|G|2474
8CF5|1|AA|G|2475
8CF5|1|AA|C|2476
8CF5|1|AA|G|2477
8CF5|1|AA|C|2478
8CF5|1|AA|C|2479
8CF5|1|AA|A|2480
8CF5|1|AA|G|2481
8CF5|1|AA|U|2482
8CF5|1|AA|G|2483
8CF5|1|AA|A|2484
8CF5|1|AA|A|2485
8CF5|1|AA|A|2486
8CF5|1|AA|U|2487
8CF5|1|AA|A|2488
8CF5|1|AA|C|2489
8CF5|1|AA|C|2490
8CF5|1|AA|A|2491
8CF5|1|AA|C|2492
8CF5|1|AA|U|2493
8CF5|1|AA|A|2494
8CF5|1|AA|C|2495

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain 1

40S ribosomal protein S25-A

Chain Cc

Transfer RNA; tRNA

Chain i

40S ribosomal protein S5