HL_8CF5_057

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

U(OMU)UCAG(OMU)GUGA

Length

11 nucleotides

Bulged bases

8CF5|1|AA|A|2727

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CF5|1|AA|U|2723
8CF5|1|AA|OMU|2724
8CF5|1|AA|U|2725
8CF5|1|AA|C|2726
8CF5|1|AA|A|2727
8CF5|1|AA|G|2728
8CF5|1|AA|OMU|2729
8CF5|1|AA|G|2730
8CF5|1|AA|U|2731
8CF5|1|AA|G|2732
8CF5|1|AA|A|2733

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L18-A

Chain F

60S ribosomal protein L21-A

Chain M

60S ribosomal protein L28

Chain N

60S ribosomal protein L29

Chain a

60S ribosomal protein L42-A