HL_8CF5_069

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

GUAUACGAC

Length

9 nucleotides

Bulged bases

8CF5|1|AA|U|3304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CF5_069 not in the Motif Atlas

Geometric match to HL_5TBW_070

Geometric discrepancy: 0.0831

The information below is about HL_5TBW_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

8CF5|1|AA|G|3303
8CF5|1|AA|U|3304
8CF5|1|AA|A|3305
8CF5|1|AA|U|3306
8CF5|1|AA|A|3307
8CF5|1|AA|C|3308
8CF5|1|AA|G|3309
8CF5|1|AA|A|3310
8CF5|1|AA|C|3311

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L17-A

Chain FF

60S ribosomal protein L3