HL_8CF5_091
3D structure
- PDB id
- 8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.71 Å
Loop
- Sequence
- CAU(OMC)CAAGG(A2M)AG
- Length
- 12 nucleotides
- Bulged bases
- 8CF5|1|c|A|416
- QA status
- Modified nucleotides: OMC, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8CF5|1|c|C|411
8CF5|1|c|A|412
8CF5|1|c|U|413
8CF5|1|c|OMC|414
8CF5|1|c|C|415
8CF5|1|c|A|416
8CF5|1|c|A|417
8CF5|1|c|G|418
8CF5|1|c|G|419
8CF5|1|c|A2M|420
8CF5|1|c|A|421
8CF5|1|c|G|422
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 0
- 40S ribosomal protein S24-A
- Chain Aa
- Elongation factor 2
- Chain H
- 60S ribosomal protein L23-A
- Chain j
- 40S ribosomal protein S6-A
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