HL_8CF5_099
3D structure
- PDB id
- 8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.71 Å
Loop
- Sequence
- UGAUCAGAUAC(OMC)G
- Length
- 13 nucleotides
- Bulged bases
- 8CF5|1|c|U|1004
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CF5_099 not in the Motif Atlas
- Geometric match to HL_1KH6_003
- Geometric discrepancy: 0.268
- The information below is about HL_1KH6_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_05426.1
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
8CF5|1|c|U|996
8CF5|1|c|G|997
8CF5|1|c|A|998
8CF5|1|c|U|999
8CF5|1|c|C|1000
8CF5|1|c|A|1001
8CF5|1|c|G|1002
8CF5|1|c|A|1003
8CF5|1|c|U|1004
8CF5|1|c|A|1005
8CF5|1|c|C|1006
8CF5|1|c|OMC|1007
8CF5|1|c|G|1008
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 2
- 40S ribosomal protein S26
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain Cc
- Transfer RNA; tRNA
- Chain Dd
- Messenger RNA
- Chain q
- 40S ribosomal protein S14-A
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