HL_8CF5_105

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CF5_105 not in the Motif Atlas

Homologous match to HL_4V88_214

Geometric discrepancy: 0.0843

The information below is about HL_4V88_214

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8CF5|1|c|A|1296
8CF5|1|c|G|1297
8CF5|1|c|U|1298
8CF5|1|c|G|1299
8CF5|1|c|A|1300
8CF5|1|c|U|1301

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain d

40S ribosomal protein S0-A

Chain f

40S ribosomal protein S2