HL_8CF5_107

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

CAUUUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CF5_107 not in the Motif Atlas

Homologous match to HL_8C3A_221

Geometric discrepancy: 0.4586

The information below is about HL_8C3A_221

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

8CF5|1|c|C|1359
8CF5|1|c|A|1360
8CF5|1|c|U|1361
8CF5|1|c|U|1362
8CF5|1|c|U|1363
8CF5|1|c|G|1364

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain i

40S ribosomal protein S5

Chain s

40S ribosomal protein S16-A

Chain v

40S ribosomal protein S19-A