HL_8CF5_108

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

8CF5|1|c|U|1398, 8CF5|1|c|C|1399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CF5_108 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.2413

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

8CF5|1|c|U|1396
8CF5|1|c|U|1397
8CF5|1|c|U|1398
8CF5|1|c|C|1399
8CF5|1|c|A|1400
8CF5|1|c|A|1401
8CF5|1|c|G|1402

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain t

40S ribosomal protein S17-A