HL_8CF5_111
3D structure
- PDB id
- 8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.71 Å
Loop
- Sequence
- GUCAUCAGC
- Length
- 9 nucleotides
- Bulged bases
- 8CF5|1|c|G|1601
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CF5_111 not in the Motif Atlas
- Homologous match to HL_4V88_220
- Geometric discrepancy: 0.1595
- The information below is about HL_4V88_220
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01927.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8CF5|1|c|G|1594
8CF5|1|c|U|1595
8CF5|1|c|C|1596
8CF5|1|c|A|1597
8CF5|1|c|U|1598
8CF5|1|c|C|1599
8CF5|1|c|A|1600
8CF5|1|c|G|1601
8CF5|1|c|C|1602
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 5
- HLJ1_G0030400.mRNA.1.CDS.1
- Chain s
- 40S ribosomal protein S16-A
- Chain u
- 40S ribosomal protein S18-A
- Chain v
- 40S ribosomal protein S19-A
- Chain w
- 40S ribosomal protein S20
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