HL_8CF5_115

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

GUCGAAAUGAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CF5|1|AA|G|1021
8CF5|1|AA|U|1022
8CF5|1|AA|C|1023
8CF5|1|AA|G|1024
8CF5|1|AA|A|1025
8CF5|1|AA|A|1026
8CF5|1|AA|A|1027
8CF5|1|AA|U|1028
8CF5|1|AA|G|1029
8CF5|1|AA|A|1030
8CF5|1|AA|C|1031

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain r

40S ribosomal protein S15