HL_8CF5_116

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

GCCUGAUUUUAUGCAGGCC

Length

19 nucleotides

Bulged bases

8CF5|1|AA|U|1568, 8CF5|1|AA|U|1569, 8CF5|1|AA|A|1571, 8CF5|1|AA|U|1572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CF5|1|AA|G|1561
8CF5|1|AA|C|1562
8CF5|1|AA|C|1563
8CF5|1|AA|U|1564
8CF5|1|AA|G|1565
8CF5|1|AA|A|1566
8CF5|1|AA|U|1567
8CF5|1|AA|U|1568
8CF5|1|AA|U|1569
8CF5|1|AA|U|1570
8CF5|1|AA|A|1571
8CF5|1|AA|U|1572
8CF5|1|AA|G|1573
8CF5|1|AA|C|1574
8CF5|1|AA|A|1575
8CF5|1|AA|G|1576
8CF5|1|AA|G|1577
8CF5|1|AA|C|1578
8CF5|1|AA|C|1579

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain CC

5.8S ribosomal RNA; 5.8S rRNA

Chain EE

60S ribosomal protein L2-A

Chain J

60S ribosomal protein L25

Chain KK

60S ribosomal protein L8-A