HL_8CF8_006

3D structure

PDB id

8CF8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eravacycline bound to the 30S head

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

8CF8|1|A|C|1136, 8CF8|1|A|G|1139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CF8_006 not in the Motif Atlas

Homologous match to HL_4LFB_026

Geometric discrepancy: 0.3158

The information below is about HL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92935.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

5

Unit IDs

8CF8|1|A|G|1134
8CF8|1|A|U|1135
8CF8|1|A|C|1136
8CF8|1|A|C|1137
8CF8|1|A|G|1138
8CF8|1|A|G|1139
8CF8|1|A|C|1140

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

Small ribosomal subunit protein uS9