HL_8CG8_034

3D structure

PDB id

8CG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

CUGAUUUUAUGCAGG

Length

15 nucleotides

Bulged bases

8CG8|1|AA|U|1569

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CG8|1|AA|C|1563
8CG8|1|AA|U|1564
8CG8|1|AA|G|1565
8CG8|1|AA|A|1566
8CG8|1|AA|U|1567
8CG8|1|AA|U|1568
8CG8|1|AA|U|1569
8CG8|1|AA|U|1570
8CG8|1|AA|A|1571
8CG8|1|AA|U|1572
8CG8|1|AA|G|1573
8CG8|1|AA|C|1574
8CG8|1|AA|A|1575
8CG8|1|AA|G|1576
8CG8|1|AA|G|1577

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain CC

5.8S ribosomal RNA; 5.8S rRNA

Chain J

60S ribosomal protein L25