HL_8CG8_053

3D structure

PDB id

8CG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

GGAAUUCAUUUUCC

Length

14 nucleotides

Bulged bases

8CG8|1|AA|C|2539

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CG8|1|AA|G|2533
8CG8|1|AA|G|2534
8CG8|1|AA|A|2535
8CG8|1|AA|A|2536
8CG8|1|AA|U|2537
8CG8|1|AA|U|2538
8CG8|1|AA|C|2539
8CG8|1|AA|A|2540
8CG8|1|AA|U|2541
8CG8|1|AA|U|2542
8CG8|1|AA|U|2543
8CG8|1|AA|U|2544
8CG8|1|AA|C|2545
8CG8|1|AA|C|2546

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain EE

60S ribosomal protein L2-A

Chain KK

60S ribosomal protein L8-A

Chain S

60S ribosomal protein L34-A

Chain e

40S ribosomal protein S1-A