HL_8CG8_101
3D structure
- PDB id
- 8CG8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.57 Å
Loop
- Sequence
- UGAUCAGAUAC(OMC)G
- Length
- 13 nucleotides
- Bulged bases
- 8CG8|1|c|U|1004
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8CG8|1|c|U|996
8CG8|1|c|G|997
8CG8|1|c|A|998
8CG8|1|c|U|999
8CG8|1|c|C|1000
8CG8|1|c|A|1001
8CG8|1|c|G|1002
8CG8|1|c|A|1003
8CG8|1|c|U|1004
8CG8|1|c|A|1005
8CG8|1|c|C|1006
8CG8|1|c|OMC|1007
8CG8|1|c|G|1008
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 2
- 40S ribosomal protein S26
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain Bb
- Transfer RNA; tRNA
- Chain Cc
- Transfer RNA; tRNA
- Chain Dd
- Messenger RNA
- Chain q
- 40S ribosomal protein S14-A
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