HL_8CG8_109

3D structure

PDB id

8CG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

CAUUUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CG8_109 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.1892

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8CG8|1|c|C|1359
8CG8|1|c|A|1360
8CG8|1|c|U|1361
8CG8|1|c|U|1362
8CG8|1|c|U|1363
8CG8|1|c|G|1364

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain i

40S ribosomal protein S5

Chain s

40S ribosomal protein S16-A

Chain v

40S ribosomal protein S19-A