HL_8CG8_126

3D structure

PDB id

8CG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

CGAAAUG

Length

7 nucleotides

Bulged bases

8CG8|1|AA|U|1028

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CG8_126 not in the Motif Atlas

Geometric match to HL_4V9F_036

Geometric discrepancy: 0.3129

The information below is about HL_4V9F_036

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8CG8|1|AA|C|1023
8CG8|1|AA|G|1024
8CG8|1|AA|A|1025
8CG8|1|AA|A|1026
8CG8|1|AA|A|1027
8CG8|1|AA|U|1028
8CG8|1|AA|G|1029

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain NN

60S ribosomal protein L11-A

Chain c

Small subunit ribosomal RNA; SSU rRNA

Chain r

40S ribosomal protein S15