HL_8CGD_011

3D structure

PDB id

8CGD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Clindamycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.98 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

8CGD|1|a|G|329, 8CGD|1|a|A|330, 8CGD|1|a|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGD_011 not in the Motif Atlas

Homologous match to HL_7RQB_012

Geometric discrepancy: 0.0803

The information below is about HL_7RQB_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.9

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

19

Unit IDs

8CGD|1|a|G|327
8CGD|1|a|U|328
8CGD|1|a|G|329
8CGD|1|a|A|330
8CGD|1|a|C|331
8CGD|1|a|A|332
8CGD|1|a|G|333
8CGD|1|a|C|334
8CGD|1|a|C|335

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

Large ribosomal subunit protein uL24