HL_8CGD_026
3D structure
- PDB id
- 8CGD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Clindamycin bound to the 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.98 Å
Loop
- Sequence
- G(PSU)GCUAACGU
- Length
- 10 nucleotides
- Bulged bases
- 8CGD|1|a|U|958, 8CGD|1|a|C|961
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CGD_026 not in the Motif Atlas
- Homologous match to HL_5J7L_159
- Geometric discrepancy: 0.0547
- The information below is about HL_5J7L_159
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8CGD|1|a|G|954
8CGD|1|a|PSU|955
8CGD|1|a|G|956
8CGD|1|a|C|957
8CGD|1|a|U|958
8CGD|1|a|A|959
8CGD|1|a|A|960
8CGD|1|a|C|961
8CGD|1|a|G|962
8CGD|1|a|U|963
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain b
- 5S ribosomal RNA; 5S rRNA
- Chain l
- Large ribosomal subunit protein uL16
- Chain v
- Large ribosomal subunit protein bL27
Coloring options: