HL_8CGK_028

3D structure

PDB id

8CGK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Lincomycin and Avilamycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.64 Å

Loop

Sequence

CCCAGACAGCGUCGAG

Length

16 nucleotides

Bulged bases

8CGK|1|a|A|1046, 8CGK|1|a|G|1107

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CGK|1|a|C|1043
8CGK|1|a|C|1044
8CGK|1|a|C|1045
8CGK|1|a|A|1046
8CGK|1|a|G|1047
8CGK|1|a|A|1048
8CGK|1|a|C|1049
8CGK|1|a|A|1050
8CGK|1|a|G|1051
8CGK|1|a|C|1052
8CGK|1|a|G|1107
8CGK|1|a|U|1108
8CGK|1|a|C|1109
8CGK|1|a|G|1110
8CGK|1|a|A|1111
8CGK|1|a|G|1112

Current chains

Chain a

23S rRNA

Nearby chains

Chain g

Large ribosomal subunit protein uL6