HL_8CGK_029

3D structure

PDB id

8CGK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Lincomycin and Avilamycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.64 Å

Loop

Sequence

GACGCGUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGK_029 not in the Motif Atlas

Homologous match to HL_4WF9_030

Geometric discrepancy: 0.3754

The information below is about HL_4WF9_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CGK|1|a|G|1168
8CGK|1|a|A|1169
8CGK|1|a|C|1170
8CGK|1|a|G|1171
8CGK|1|a|C|1178
8CGK|1|a|G|1179
8CGK|1|a|U|1180
8CGK|1|a|U|1181

Current chains

Chain a

23S rRNA

Nearby chains