HL_8CGK_032
3D structure
- PDB id
- 8CGK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Lincomycin and Avilamycin bound to the 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.64 Å
Loop
- Sequence
- GUUAAUC
- Length
- 7 nucleotides
- Bulged bases
- 8CGK|1|a|U|1325, 8CGK|1|a|U|1329
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CGK_032 not in the Motif Atlas
- Homologous match to HL_5J7L_166
- Geometric discrepancy: 0.0543
- The information below is about HL_5J7L_166
- Detailed Annotation
- Pseudoknot geometry with 3' bulge
- Broad Annotation
- No text annotation
- Motif group
- HL_57176.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
8CGK|1|a|G|1324
8CGK|1|a|U|1325
8CGK|1|a|U|1326
8CGK|1|a|A|1327
8CGK|1|a|A|1328
8CGK|1|a|U|1329
8CGK|1|a|C|1330
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain m
- Large ribosomal subunit protein bL17
- Chain r
- Large ribosomal subunit protein uL22
Coloring options: