3D structure

PDB id
8CGK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Lincomycin and Avilamycin bound to the 50S subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.64 Å

Loop

Sequence
GUUAAUC
Length
7 nucleotides
Bulged bases
8CGK|1|a|U|1325, 8CGK|1|a|U|1329
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8CGK_032 not in the Motif Atlas
Homologous match to HL_5J7L_166
Geometric discrepancy: 0.0543
The information below is about HL_5J7L_166
Detailed Annotation
Pseudoknot geometry with 3' bulge
Broad Annotation
No text annotation
Motif group
HL_57176.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
14

Unit IDs

8CGK|1|a|G|1324
8CGK|1|a|U|1325
8CGK|1|a|U|1326
8CGK|1|a|A|1327
8CGK|1|a|A|1328
8CGK|1|a|U|1329
8CGK|1|a|C|1330

Current chains

Chain a
23S rRNA

Nearby chains

Chain m
Large ribosomal subunit protein bL17
Chain r
Large ribosomal subunit protein uL22

Coloring options:


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