HL_8CGK_042

3D structure

PDB id

8CGK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Lincomycin and Avilamycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.64 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

8CGK|1|a|U|1729, 8CGK|1|a|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGK_042 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.2871

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

8CGK|1|a|C|1727
8CGK|1|a|C|1728
8CGK|1|a|U|1729
8CGK|1|a|C|1730
8CGK|1|a|G|1731
8CGK|1|a|C|1732
8CGK|1|a|G|1733

Current chains

Chain a

23S rRNA

Nearby chains