HL_8CGN_010

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGN_010 not in the Motif Atlas

Homologous match to HL_8C3A_010

Geometric discrepancy: 0.065

The information below is about HL_8C3A_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8CGN|1|AA|A|357
8CGN|1|AA|G|358
8CGN|1|AA|U|359
8CGN|1|AA|G|360
8CGN|1|AA|A|361
8CGN|1|AA|U|362

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain GG

60S ribosomal protein L4-A

Chain V

60S ribosomal protein L37-A

Chain X

60S ribosomal protein L39