HL_8CGN_023

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

CGAAAUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGN_023 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.2304

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8CGN|1|AA|C|1023
8CGN|1|AA|G|1024
8CGN|1|AA|A|1025
8CGN|1|AA|A|1026
8CGN|1|AA|A|1027
8CGN|1|AA|U|1028
8CGN|1|AA|G|1029

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain r

40S ribosomal protein S15

Chain u

40S ribosomal protein S18-A