HL_8CGN_035

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

GUUAAGAUUC

Length

10 nucleotides

Bulged bases

8CGN|1|AA|U|1606, 8CGN|1|AA|U|1607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGN_035 not in the Motif Atlas

Homologous match to HL_8C3A_035

Geometric discrepancy: 0.0858

The information below is about HL_8C3A_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8CGN|1|AA|G|1599
8CGN|1|AA|U|1600
8CGN|1|AA|U|1601
8CGN|1|AA|A|1602
8CGN|1|AA|A|1603
8CGN|1|AA|G|1604
8CGN|1|AA|A|1605
8CGN|1|AA|U|1606
8CGN|1|AA|U|1607
8CGN|1|AA|C|1608

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L19-A

Chain J

60S ribosomal protein L25

Chain S

60S ribosomal protein L34-A

Chain X

60S ribosomal protein L39