HL_8CGN_047

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

AGAAAGU

Length

7 nucleotides

Bulged bases

8CGN|1|AA|G|2169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGN_047 not in the Motif Atlas

Homologous match to HL_8C3A_047

Geometric discrepancy: 0.0536

The information below is about HL_8C3A_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8CGN|1|AA|A|2164
8CGN|1|AA|G|2165
8CGN|1|AA|A|2166
8CGN|1|AA|A|2167
8CGN|1|AA|A|2168
8CGN|1|AA|G|2169
8CGN|1|AA|U|2170

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain EE

60S ribosomal protein L2-A

Chain KK

60S ribosomal protein L8-A

Chain QQ

60S ribosomal protein L15-A