HL_8CGN_051

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8CGN|1|AA|A|2372, 8CGN|1|AA|A|2373, 8CGN|1|AA|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGN_051 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0477

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8CGN|1|AA|G|2369
8CGN|1|AA|G|2370
8CGN|1|AA|G|2371
8CGN|1|AA|A|2372
8CGN|1|AA|A|2373
8CGN|1|AA|C|2374
8CGN|1|AA|G|2375
8CGN|1|AA|G|2376
8CGN|1|AA|G|2377
8CGN|1|AA|C|2378

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L16-A

Chain FF

60S ribosomal protein L3

Chain Q

60S ribosomal protein L32