HL_8CGN_057

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGN_057 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.208

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8CGN|1|AA|A|2673
8CGN|1|AA|A|2674
8CGN|1|AA|C|2675
8CGN|1|AA|A|2676
8CGN|1|AA|G|2677
8CGN|1|AA|A|2678
8CGN|1|AA|A|2679
8CGN|1|AA|A|2680
8CGN|1|AA|U|2681

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain NN

60S ribosomal protein L11-A